Index B | C | D | E | F | G | H | I | L | M | N | P | R | S | W B branch_probs (palantir.presults.PResults property) C cell_types() (in module palantir.plot) CellNotFoundException check_colornorm() (in module palantir.plot) cluster_gene_trends() (in module palantir.presults) compute_gene_trends() (in module palantir.presults) compute_gene_trends_legacy() (in module palantir.presults) compute_kernel() (in module palantir.utils) D density_2d() (in module palantir.plot) determine_multiscale_space() (in module palantir.utils) diffusion_maps_from_kernel() (in module palantir.utils) E early_cell() (in module palantir.utils) entropy (palantir.presults.PResults property) F fallback_terminal_cell() (in module palantir.utils) FigureGrid (class in palantir.plot) filter_counts_data() (in module palantir.preprocess) find_terminal_states() (in module palantir.utils) G gam_fit_predict() (in module palantir.presults) gene_score_histogram() (in module palantir.plot) get_fig() (in module palantir.plot) H highlight_cells_on_umap() (in module palantir.plot) I identify_terminal_states() (in module palantir.core) L load() (palantir.presults.PResults class method) log_transform() (in module palantir.preprocess) M module palantir.core palantir.plot palantir.preprocess palantir.presults palantir.utils N normalize_counts() (in module palantir.preprocess) P palantir.core module palantir.plot module palantir.preprocess module palantir.presults module palantir.utils module plot_branch() (in module palantir.plot) plot_branch_selection() (in module palantir.plot) plot_diffusion_components() (in module palantir.plot) plot_gene_expression() (in module palantir.plot) plot_gene_trend_clusters() (in module palantir.plot) plot_gene_trend_heatmaps() (in module palantir.plot) plot_gene_trends() (in module palantir.plot) plot_gene_trends_legacy() (in module palantir.plot) plot_molecules_per_cell_and_gene() (in module palantir.plot) plot_palantir_results() (in module palantir.plot) plot_stats() (in module palantir.plot) plot_terminal_state_probs() (in module palantir.plot) plot_trajectories() (in module palantir.plot) plot_trajectory() (in module palantir.plot) plot_trend() (in module palantir.plot) plot_tsne_by_cell_sizes() (in module palantir.plot) prepare_color_vector() (in module palantir.plot) PResults (class in palantir.presults) pseudotime (palantir.presults.PResults property) R run_density() (in module palantir.utils) run_density_evaluation() (in module palantir.utils) run_diffusion_maps() (in module palantir.utils) run_local_variability() (in module palantir.utils) run_low_density_variability() (in module palantir.utils) run_magic_imputation() (in module palantir.utils) run_palantir() (in module palantir.core) run_pca() (in module palantir.utils) S save() (palantir.presults.PResults method) select_branch_cells() (in module palantir.presults) W waypoints (palantir.presults.PResults property)